species:   Rhsol
pid:       PID0575
parent:    Rhi-milR-22
paralog:   
locus:     KB317742.1:6395-6475
matures:   ['AGCGAGUUGCAGUUCCUGGAUGC', 'UUCCAGGUACAAGCUGUAUCUCCUAU']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317742.1:6395-6475

35 out of bounds
643 alignments
14 proper strand
14 stranded perfect matches

        *****************************  ********************************          
AAGAAAGCCUAGCGAGUUGCAGUUCCUGGAUGCUUAUUAAUAAGCUUCCAGGUACAAGCUGUAUCUCCUAUAUUCAUAUAG
.........(((.(((.(((((((((((((.(((((....))))).))))))....))))))).))))))...........
----------AGCGAGUUGCAGUUCCUGGAUGC------------------------------------------------ l=23 a=0 c
---------------------------------------------UUCCAGGUACAAGCUGUAUCUCCUAU---------- l=26 a=0 c*
----------AGCGAGUUGCAGUUCCUGGAUGCUUAU-------------------------------------------- l=27 a=6 ma
-----------------------------------------AAGCUUCCAGGUACAAGCUGUAUCUCCUAU---------- l=30 a=0 ma*

---------UAGCGAGUUGCAGUUCCUGGAUG------------------------------------------------- l=23 a=2 
---------UAGCGAGUUGCAGUUCCUGGAUGCU----------------------------------------------- l=25 a=1 
----------AGCGAGUUGCAGUUCCUGGAU-------------------------------------------------- l=21 a=1 
----------AGCGAGUUGCAGUUCCUGGAUGCU----------------------------------------------- l=24 a=2 
----------AGCGAGUUGCAGUUCCUGGAUGCUUAU-------------------------------------------- l=27 a=6 (ma)
----------AGCGAGUUGCAGUUCCUGGAUGCUUAUU------------------------------------------- l=28 a=2 

mb-01011
ax-1001001
ku-01
ss-101011001100
fn-101
